Fast, volumetric cell detection for multi-plane two-photon imaging
Hippocampus
Scroll to zoom, drag to pan — all three panels move together. Click a cell to
select it. Arrow keys step time (← →) and plane (↑ ↓);
0 resets the zoom.
Rigid motion
Rigid shift applied to each volume, in voxels. The marker follows the scrubber. Blocked
non-rigid shifts are estimated on top of these and are not plotted.
Traces
Click a cell in any panel above.
Neuropil-corrected fluorescence (
F − 0.7 × Fneu) and the
deconvolved trace (spks), as written by the pipeline.
mov_sub is time-binned by the pipeline: one bin is 10 volumes.
Both panels are averaged over the same window, so they show the same instant. One step of
the time slider is 1.67 s, and the clip
covers the first
100 s of the recording.