Fast, volumetric cell detection for multi-plane two-photon imaging
Mouse V1
Scroll to zoom, drag to pan — all three panels move together. Click a cell to
select it. Arrow keys step time (← →) and plane (↑ ↓);
0 resets the zoom.
Rigid motion
Rigid shift applied to each volume, in voxels. The marker follows the scrubber. Blocked
non-rigid shifts are estimated on top of these and are not plotted.
Traces
Click a cell in any panel above.
Neuropil-corrected fluorescence (
F − 0.7 × Fneu) and the
deconvolved trace (spks), as written by the pipeline.
mov_sub is time-binned by the pipeline: one bin is 6 volumes.
Both panels are averaged over the same window, so they show the same instant. One step of
the time slider is 1.80 s, and the clip
covers the first
108 s of the recording.